| TYPE | NAME | CORE |
| Brightfield, color camera | Nikon Eclipse | Laboratory for Cell Analysis |
| | Nikon Ti 6D Widefield, 5 colors | Nikon Imaging Center |
| | Leica MZ12.5 stereo microscope with digital camera | Macromolecular Structure Group Crystallography & SAXS Facility |
| | Leica MZ16 stereo microscope with digital camera | Macromolecular Structure Group Crystallography & SAXS Facility |
| | Leica SMZ 100 stereo microscope | Macromolecular Structure Group Crystallography & SAXS Facility |
| Epifluorescent | Nikon Eclipse | Laboratory for Cell Analysis |
| | Zeiss Axio Imager, upright | Laboratory for Cell Analysis |
| | Zeiss Axio Observer, inverted | Laboratory for Cell Analysis |
| | Nikon Ti 6D Widefield, 5 colors | Nikon Imaging Center |
| | Korima PRS-1000 fluorescence stereo microscope with digital camera | Macromolecular Structure Group Crystallography & SAXS Facility |
| | Keyence BZ-X700 | Gladstone Histology and Light Microscopy Core |
| | Keyence BZ-X800 | Gladstone Histology and Light Microscopy Core |
| | Keyence BZ-9000 | Gladstone Histology and Light Microscopy Core |
| | Leica Versa 200 Slide scanner, “octopus” | Gladstone Histology and Light Microscopy Core |
| Epifluorescent / Live imaging | Nikon Ti Timelapse Widefield | Nikon Imaging Center |
| Light sheet | Nikon AZ-100 Light sheet | Nikon Imaging Center |
| | Zeiss Z1 lightsheet, "Fin Whale" | Gladstone Histology and Light Microscopy Core |
| | Miltenyi Biotec Ultra Microscope Blaze | Gladstone Histology and Light Microscopy Core |
| Confocal, laser scanning | Zeiss LSM 880 inverted with Airyscan, "Tarsier" | Gladstone Histology and Light Microscopy Core |
| | Nikon FN-1/C1si Spectral confocal | Nikon Imaging Center |
| | Evident FV3000, “Snow Leopard” | Gladstone Histology and Light Microscopy Core |
| Confocal, spinning disk | Zeiss Cell Observer with 3-laser incubation | Laboratory for Cell Analysis |
| | Nikon Ti inverted with incubator | Nikon Imaging Center |
| | Nikon Ti High speed widefield / confocal | Nikon Imaging Center |
| | Zeiss Cell Observer inverted with Lambda DG4, "Hare" | Gladstone Histology and Light Microscopy Core |
| Multiphoton | 3i VIVO Multiphoton, movable objective with holography | Light Microscopy at the Innovation Core |
| | 3i VIVO Multiphoton, upright | Light Microscopy at the Innovation Core |
| | Zeiss LSM 780 spectral confocal | Laboratory for Cell Analysis |
| Super-resolution | Nikon Ti N-SIM | Nikon Imaging Center |
| | Nikon Ti TIRF/N-STORM | Nikon Imaging Center |
| | Zeiss LSM 880 inverted scanning confocal with Airyscan, "Tarsier" | Gladstone Histology and Light Microscopy Core |