Genomics Cores Family

Genomics cores provide key technology and services across the full range of genetic and genomic research, from planning an experiment through data analysis and storage. They can also connect investigators with related services from UCSF partners.

Contact the cores directly to see how they can help you with your genomics needs. The cores provide a range of consultation services on experimental design, data analysis, sample preparation, reagents, consumables, equipment, vendor partners, and cross-core workflows.

Find core resources by a common workflow below, or use Cores Search to look for an instrument or service by name or related term.

Next Generation Sequencing (NGS) services

Library Preparation

  • Gladstone Genomics Core
  • IHG Genomics Core Facility
  • UCSF Functional Genomics Core

Sequencing

  • Center for Advanced Technology (MiSeq, HiSeq 4000, NovaSeq)
  • Gladstone Genomics Core (MiSeq, NextSeq)
  • IHG Genomics Core Facility (HiSeq 2500, NovaSeq)
  • UCSF Viral Diagnostics and Discovery Center (ViroChip, mNGS)

Analysis

  • Gladstone Genomics Core
  • IHG Genomics Core Facility
  • UCSF Functional Genomics Core
  • UCSF Viral Diagnostics and Discovery Center

Single-Cell Analysis Center

The Single Cell Analysis Center (SCAC) consists of a team of Core facilities working together to provide state-of-the-art instrumentation and expertise to advance the analysis of gene and protein expression at the single-cell level for both basic and translational research.

Contact the Project Manager at scachelp@ucsf.edu to find how the SCAC can help you with your research by setting up an initial consultation and putting you in contact with the appropriate Cores.

Cell Identification and Isolation

Use technologies and services to identify and isolate single cells and their genomic content from imaging, flow, and genomics cores.

Sequencing

After isolatiing genomic content from single cells, genomics cores can provide library preparation and sequencing services.

Data Analysis

The Bioinformatics Cores Family can help you develop a pipeline to analyze all your data.

Mouse Model Generation (see Animal-related Research Family)

Other Genomics services

Genome Engineering

  • Cell and Genome Engineering Core
  • UCSF Viracore

PCR (Polymerase Chain Reaction)

  • Center for Advanced Technology
  • Gladstone Genomics Core
  • HDFCCC Genome Analysis
  • IHG Genomics Core Facility

Genotyping

  • HDFCCC Genome Analysis
  • IHG Genomics Core Facility

High-throughput systems

  • Center for Advanced Technology
  • HDFCCC Genome Analysis
  • IHG Genomics Core Facility

Stem Cell Study

  • Gladstone Stem Cell Core

Microarray

  • Center for Advanced Technology
  • Gladstone Genomics Core
  • IHG Genomics Core Facility

RNA/DNA Extraction

  • Cell and Genome Engineering Core
  • Gladstone Genomics Core
  • IHG Genomics Core Facility